eKLIPse: a sensitive tool for the detection and quantification of mitochondrial DNA deletions from next-generation sequencing data - Genetics in Medicine
Reads filtering · Issue #879 · igvteam/igv.js · GitHub
BAMClipper: removing primers from alignments to minimize false-negative mutations in amplicon next-generation sequencing | Scientific Reports
![PDF] Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads | Semantic Scholar](https://d3i71xaburhd42.cloudfront.net/16b34a01c549bc1b12b6c5a17e85e1db117f26e3/2-Figure1-1.png "PDF] Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads | Semantic Scholar")
PDF] Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads | Semantic Scholar
ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly | Genome Medicine | Full Text
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
NGS data logistics
IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis | Scientific Reports
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information | BMC Bioinformatics | Full Text
What is local realignment and what is the problem it solves? - Bioinformatics Stack Exchange
Preferences | Integrative Genomics Viewer
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
soft clipping primers from BAM files using sequences · Issue #3 · tommyau/bamclipper · GitHub
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
The formation of soft-clipped reads. Soft-clipped reads span the... | Download Scientific Diagram
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
Frontiers | MATCHCLIP: locate precise breakpoints for copy number variation using CIGAR string by matching soft clipped reads | Genetics
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
SIns: A Novel Insertion Detection Approach Based on Soft-Clipped Reads | Genetics - Frontiers
Assessment of mapping strategies for determining the 5□-end of mRNAs and long-noncoding RNAs with short read sequences | bioRxiv
